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germline-variant-calling

Here are 5 public repositories matching this topic...

nf-cmgg / germline

A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data

annotation ngs germline cram ngs-pipeline genotyping germline-variant-calling short-reads

Updated Nov 6, 2024
Nextflow

Sydney-Informatics-Hub / Germline-StructuralV-nf

Germline structural variant calling pipeline for short read WGS datasets

workflow bioinformatics pipeline genomics nextflow ngs manta bam survivor structural-variants smoove tiddit germline-variant-calling annotsv dsl2 australian-biocommons

Updated Oct 23, 2024
Nextflow

Selma

elixir-no-nels / Selma

Germline Variant Calling Pipeline built in Snakemake

snakemake singularity scatter-gather containerized germline-variant-calling gatk4

Updated Feb 18, 2020
Shell

jpuntomarcos / CNVbenchmarkeR2

Framework to benchmark germline copy-number variant detection tools from NGS data

benchmark ngs copy-number-variation germline-variant-calling

Updated May 29, 2024
R

annalisaxamin / CHGproject

Project for the course of Computational Human Genomics, held by Francesca Demichelis (a.y. 2021-2022) @ University of Trento

genomics somatic-variants gatk ancestry bedtools vcftools tumor-evolution germline-variant-calling clonet tumor-purity-estimation humangenomics tumor-ploidy tpes

Updated May 3, 2023
Shell

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