Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
-
Updated
Nov 29, 2018 - TeX
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
Wrapper tool of RaGOO by CWL and Docker
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
Genome scaffolding and phasing with Hi-C using a genetic algorithm approach.
Method for rescuing collapsed contigs.
A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitochondrion and/or chloroplast). It automatically assesses the quality of the results.
Pipeline for genome scaffolding by modelling distributions of HiC pairs
⛓️ Construct a Physical Map from Linked Reads
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
🍶 Genome assembly with short sequence reads
Suite of tools for use in genome assembly and consensus. Work in progress.
⛓ Correct misassemblies using linked AND long reads
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
Add a description, image, and links to the genome-scaffolding topic page so that developers can more easily learn about it.
To associate your repository with the genome-scaffolding topic, visit your repo's landing page and select "manage topics."