Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
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Updated
Nov 29, 2018 - TeX
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
Method for rescuing collapsed contigs.
Wrapper tool of RaGOO by CWL and Docker
Genome scaffolding and phasing with Hi-C using a genetic algorithm approach.
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
Suite of tools for use in genome assembly and consensus. Work in progress.
Pipeline for genome scaffolding by modelling distributions of HiC pairs
A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitochondrion and/or chloroplast). It automatically assesses the quality of the results.
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
⛓️ Construct a Physical Map from Linked Reads
🍶 Genome assembly with short sequence reads
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
⛓ Correct misassemblies using linked AND long reads
RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
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