Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
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Updated
Aug 1, 2024 - Python
Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
Genomics workflows for CPG using Hail Batch
A bioinformatics tool for designing primers and generating consensus sequences in viral genome analysis. It supports processing multiple aligned genomic sequences, optimizing primers, and visualizing genome annotations.
Earl Grey: A fully automated TE curation and annotation pipeline
NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data
Genomic data manipulation tool
provides common tools and lookup tables used primarily by the hgvs and uta packages
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
non-redundant, compressed, journalled, file-based storage for biological sequences
tairaccession python package for interaction with tair and analyzing arabidopsis genome.
a sql python class to prepare the genome files for the sqlite3
Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
Illumina short read assembly data pipeline for phage
OpenAPI-based REST interface to biological sequences and sequence metadata
biocommons website
A repository for efficient population genomic analysis using Snakemake workflow.
A python project for analysis of codon usage for gene or genome analysis
GRAMEP - Genome vaRiation Analysis from the Maximum Entropy Principle
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