This a GenePattern Javascript visualizer that creates a CLS file from a GCT file.
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Updated
Jul 15, 2021 - JavaScript
This a GenePattern Javascript visualizer that creates a CLS file from a GCT file.
Module for GSEA Julia Implementation
Actual creation of the Elastic Principa Graph in the STREAM scRNASeq Trajectory analysis, packaged as a GenePattern module
Detect differentially expressed genes between pairs of trajectory branches
Views results of hierarchical clustering.
Repo for the HISAT2 .ndexer module which creates indices for the HISAT2.aligner module
Salmon quantification wrapper module for GenePattern.
Determine which tryptic peptides will generate the highest signal in ESI-MS
Detect marker genes that distinguish the different trajectories
Visualize expression of genes of interest after Conos.Cluster has been ran.
Salmon Alevin (single cell) quantification wrapper module for GenePattern.
HTSeq (0.11.2) wrapper module: Counting reads in features with 'htseq-count'
Generate the signature subway and stream plots
Step one of the STREAM ssRNA-Seq Trajectory pipeline
Wrapper Script for Harmony designed to work with GenePattern Module Integrator
A configurable heat map viewer that provides users with several options for manipulating and visualizing array-based data
scVelo wrapper module for GenePattern
This module will turn a TXT file into ComparativeMarkerSelectionViewer-compatible ODF file
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