Code to reproduce analyses of mouse cortical gradients

Workflow for retrieving spatial gene-expression data from the Allen Institute's Mouse Brain Atlas

A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.

RNA-seq reads to gene counts

Require one command line! Generate nine common RNAseq figures from RNAseq result table by python.

The Cancer Genome Atlas datbase | Cancer Classification | Deep Learning | CNN

HRD200: Machine learning model to predict patient HRD status using gene expression data

This project was conducted for the Stanford BioHacks hackathon.

CocoTF: a workflow to identify context specific co-occurring TF motifs using bedtools, Homer and R packages.

DPre is a bioinformatic tool that enables the user to explore cell type conversion/ differentiation experiments. DPre may take the expression or the differentially regulated genes of the samples to rate transcriptional similarity with a reference dataset, the targets.

Implementation code for evaluating COMET approach on various simulation datasets

Repository of my internship in the RDDS lab of the University of Trento

PCA: Exploring transcriptome-wide changes using python (pandas/scikit-learn/matplotlib) 🧬 💻 👩‍🔬 🖥️

A biclustering library with datasets, evaluation measures and a benchmarking framework

An R-shiny package to analyse and visualise fungal gene expression data

migrated from Gitlab

This is the R code to extract Gene Expression Profiles of particular genes from GEO (Gene Expression Omnibus) datasets.

Predict the samplesizes for certain errorrates for statistical classifiers

Differential expression analysis using R 🧬