gene-ontology
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The mission of the GO Consortium is to develop a comprehensive, computational model of biological systems, ranging from the molecular to the organism level, across the multiplicity of species in the tree of life.
The Gene Ontology (GO) knowledgebase is the world’s largest source of information on the functions of genes. This knowledge is both human-readable and machine-readable, and is a foundation for computational analysis of large-scale molecular biology and genetics experiments in biomedical research.
Here are 28 public repositories matching this topic...
GOfreq: GO prediction by BLAST and PSIBLAST sequence search
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Feb 6, 2017 - Python
Gene ontology (GO) semantic similarity library for Python
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Sep 28, 2018 - Python
An R package for RNA-seq DGE downstream automation and clustering analysis
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May 13, 2019 - Python
A Bio2BEL package for converting the Gene Ontology (GO) to BEL
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Mar 28, 2020 - Python
GO enrichment with python -- pandas meets networkx
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Jul 15, 2020 - Python
A tool for non-coding genomic regions function enrichment analysis based on Regulatory Elements Gene Ontology Annotation (RE-GOA)
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Sep 4, 2021 - Python
A tool for non-coding genomic regions function enrichment analysis based on Regulatory Elements Gene Ontology Annotation (RE-GOA)
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Sep 6, 2021 - Python
Stochastic Gene Ontology Enrichment Analyses (GOEA) Simulations in manscript + Multiple-Test Correction Simulations
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Sep 28, 2021 - Python
scripts for parsing PDB, fasta, and GO
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Oct 20, 2021 - Python
Unsupervised neural network for learning embeddings of GO terms.
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Feb 19, 2022 - Python
DeepMiR2GO: Inferring Gene Ontology Function of Human MicroRNAs based on a deep multi-label classification model
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Nov 21, 2022 - Python
Function prediction using a deep ontology-aware classifier
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Nov 21, 2022 - Python
This is the repository for reproducing results in "APRILE: Exploring the Molecular Mechanisms of Drug Side Effects with Explainable Graph Neural Networks".
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Dec 2, 2022 - Python
Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
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Dec 29, 2022 - Python
[ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding
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Feb 22, 2023 - Python
Deep functional residue identification
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Mar 24, 2023 - Python
Transcripts annotation and GO enrichment Fisher tests
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Apr 28, 2023 - Python
This code was written and used to perform the comparative interactome analysis of β-arrestin1 and 2.
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May 4, 2023 - Python
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