Github Page for the Baccarelli Lab
-
Updated
Nov 18, 2019 - CSS
Github Page for the Baccarelli Lab
This is a repository to show my experience analyzing different kinds of epigenomics data.
Repo for code for using the MultiSNP-expecto tool and analysis pipeline
My PhD thesis: Epigenetic characterization of murine Dnmt1-deficient MLL-AF9 leukemia
Public archive for EpiCompare reports.
Preprocessing of epigenomic data from fastq files.
Integrated Visualization of (Epi)Genomic Data in R
Tools for epigenetic data analysis
Base-conversion Sequencing Aligner
Integration of ATAC-Seq and multi-assay ChIP-Seq data using IDEAS (Hidden Markov Model) approach.Multi-Epigenomic state annotation with CHDI NeuroLINCS Epigenomics data using the tool "IDEAS"
Benchmark Epigenomic Profiling Methods with Motif Enrichment as Key Metric
PKnorm: a nonlinear model for sequencing depth and signal-to-noise ratio normalization between epigenomic data
A user-friendly toolkit for QC, counting, clustering and plotting of single-cell (epi)genomics data
Training an interpretation of ensemble of convolutional neural networks for multi-task functional genomic classification tasks.
ENCODE reproducibility check, cutandrun & TIP-seq benchmark
reports generated by ataqv for Gaulton lab ATAC data
ATAC-seq pipeline written in Nextflow
Scripts for the analysis of single-cell epigenomics data using Sparse-FDA
Add a description, image, and links to the epigenomics topic page so that developers can more easily learn about it.
To associate your repository with the epigenomics topic, visit your repo's landing page and select "manage topics."