rGenomeTracks is an R package the leverage the power of pyGenomeTracks to create quick and tidy epigenomic visualizations in R.
Installation from bioconductor
BiocManager::install("rGenomeTracks")or from github
## install.packages("devtools")
devtools::install_github("OAshkar/rGenomeTracks")library(rGenomeTracks)
# Get track directory
tads_dir <- system.file("extdata", "tad_classification.bed", package = "rGenomeTracks")
# Create TADS track
tads <- track_domains(
file = tads_dir, border_color = "black",
color = "none", height = 5,
line_width = 5,
show_data_range = FALSE,
)
#Plot the track
par(mar = c(1,1,1,1))
plot_gtracks(tads, chr = "X", start = 25 * 10^5, end = 31 * 10^5)Please visit the package's vignette for more examples.
citation(rGenomeTracks)Feel free to open a new issue here: https://github.com/OAshkar/rGenomeTracks/issues