Python toolkit for parsing, processing, and analysis of Illumina methylation array IDAT files

A simple tool for viewing and reporting base modification frequencies from BAM files

A gene regulation model reveals an ancestral adaptation response to particulate exposure triggered by nanomaterials

Repository of tools and analyses used during: "Double and single stranded detection of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore sequencing" (in process)

🎯 ChIP peak Annotation, Comparison and Visualization

ChIP-seq pipeline specific for the Zwart lab

An R package for classifying, comparing, and investigating sub-region structural changes of (super) enhancers (or other large domains).

Epigenetics Research

Comparison, benchmarking & QC of epigenetic datasets

Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.

An android app made using React Native for Appathon 2024

Small scripts for epigenetics sequencing data analysis.

DNA methylation analysis pipeline for reduced representation bissulfite sequencing data

A simulation of the biological process of DNA transcription developed at the Lavigne Lab - IMBB FoRTH.

CWL based Bioinformatics Workflows

Python package to analyze DNA methylation data

EpiProfile 2.0: A Computational Platform for Processing Epi-Proteomics Mass Spectrometry Data

MR.PARETO - Modules & Recipes for Pragmatic Augmentation of Research Efficiency Towards Optimum

R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing