Supplemental codes for the Chapter 14 Chromatin Sequencing and Data Analysis of the NYMU-GRC eBook 基因體技術與資料分析手冊
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Updated
Jul 30, 2020 - R
Supplemental codes for the Chapter 14 Chromatin Sequencing and Data Analysis of the NYMU-GRC eBook 基因體技術與資料分析手冊
Shiny app for LAM enrichment analysis of Infinium methylation data
Code for the crb2a multi omics manuscript
Code for SCLC cfMeDIP-seq PRIME as described in the following paper: doi: 10.1016/j.isci.2022.105487
scripts for scRNA-Seq/scATAC-Seq
A gene regulation model reveals an ancestral adaptation response to particulate exposure triggered by nanomaterials
After getting the bed file from the Peak calling, we can annotate and create all downstream analysis of two sets of data
SMP: A Salmonella Methylation analysis Pipeline
Provides easy to use, objective oriented functions for preprocessing methylation data produced by an Illumina Infinium BeadChip and detecting differentially methylated positions and regions within the DNA.
Repository containing the scripts and the analysis plan from "Pre-pregnancy maternal body mass index and placental DNA methylation: a meta-analysis of 2,631 mother-child pairs" by N. Fernandez-Jimenez et al (under review in Commun Biol).
Code and data to build and use Cis-Regulatory Hubs.
This repository contains the code used in the following publication: doi.org/10.1016/j.isci.2022.105487
GAMLSS code for modeling PFAS DNA methylation relationship.
R codes of the figures from the Epigenetics CSMD1 paper
This pipeline is designed for the analysis of DNA methylation data generated from the Illumina HumanMethylation450 BeadChip platform.
DecoFlex deconvolution method for Omic data implemented as DecoFlexR
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