Scientific analysis of nanoscale materials imaging data
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Updated
Jun 7, 2024 - Jupyter Notebook
Scientific analysis of nanoscale materials imaging data
Open pixelated STEM framework
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)
Read and write Neuroglancer datasets programmatically.
Deep and Machine Learning for Microscopy
A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.
Axon/Myelin segmentation using Deep Learning
A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomedical image data
Python library for reading and writing scientific data format
Python program for automated electron diffraction data collection
Collection of algorithms and routines for (ultrafast) electron diffraction and scattering
High Throughput Electron Microscopy Image Processing Software
Scalable Optical Flow-based Image Montaging and Alignment
A curated list of awesome computational cryo-EM methods.
Workflow for Simulation and Automatic Semantic Segmentation of Electron Microscopy Images
Functions for analysis of high resolution electron microscopy and spectroscopy data.
Package for analysing particles in electron microscopy data sets.
Felix: Bloch wave method diffraction pattern simulation software
Implementation of geometric phase analysis (GPA) in C++
A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks, based on Theano
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