JED is a program for performing Essential Dynamics of protein trajectories written in Java. JED is a powerful tool for examining the dynamics of proteins from trajectories derived from MD or Geometric simulations. Currently, there are two types of PCA: distance-pair and Cartesian, and three models: COV, CORR, and PCORR.
pymol
pca-analysis
free-energy
covariance-matrix
principal-components
dynamical-modeling
kernel-density-estimation
correlation-measures
essentialmode
correlation-matrices
eigen-vector-decomposition
subspace-identification
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Updated
May 18, 2018 - HTML