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drug-sensitivity

Here are 9 public repositories matching this topic...

paccmann_predictor

PaccMann / paccmann_predictor

PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction prediction

deep-learning pytorch pharmacogenomics drug-interaction drug-sensitivity proteochemometrics

Updated May 21, 2024
Python

paccmann_rl

PaccMann / paccmann_rl

Code pipeline for the PaccMann^RL in iScience: https://www.cell.com/iscience/fulltext/S2589-0042(21)00237-6

deep-learning drug-discovery transcriptomics generative-models drug-sensitivity de-novo-drug-design

Updated Feb 10, 2022

sriram-lab / egem

epigenome scale metabolic modeling for cancer metabolism

metabolic-models metabolic-reconstruction epigenomics cancer-metabolism genome-scale-modeling histone-ptms histone-acetylation drug-sensitivity

Updated Apr 16, 2022
MATLAB

PaccMann / paccmann_predictor_tf

Tensorflow implementation of PaccMann (drug sensitivity prediction)

deep-learning cancer tensorflow drug-response-prediction drug-sensitivity

Updated Sep 17, 2021
Python

PGxAUTH / PGxGDSC

R scripts included in a bioinformatics pipeline for differential PGx analysis of cancer drug response

bioinformatics pharmacogenomics drug-target-interactions cancer-cells drug-sensitivity

Updated Dec 8, 2021
R

PiotrTymoszuk / htGLMNET

High Throughput Light Weight Regularized Regression Modeling for Molecular Data

machine-learning genetics ridge-regression transcriptomics regularized-linear-regression generalized-linear-models lasso-regression elastic-net-regression drug-sensitivity

Updated Apr 12, 2024
R

dhruba018 / DREAM_BeatAML

CTD-squared BeatAML DREAM Challenge

predictive-modeling model-stacking drug-sensitivity

Updated Dec 6, 2020
Python

Oyasante / cadega

A dataset and pre-production project for evaluating drug sensitivity scores across a network and identifying cancer dependency genes. Draws from NetMix and NETPHIX.

cancer-genomics network-analysis drug-sensitivity

Updated Apr 16, 2021
Java

inab / vre_dpfrep_executor

DpFrEP tool job executor for iPC VRE

wrapper tool ipc vre ipc-project drug-sensitivity

Updated Aug 30, 2022
Python

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