We provide DeepMedic and 3D UNet in pytorch for brain tumore segmentation. We also integrate location information with DeepMedic and 3D UNet by adding additional brain parcellation with original MR images.

This repo reimplements the single-pathway DeepMedic architecture

Fully supervised, multi-class 3D brain segmentation in T1 MRI using an ensemble of diverse CNN architectures (3D FCN, 3D U-Net) with multi-scale input.

Implementation of the Mean Teacher method for brain lesion segmentation based on DeepMedic, from paper published in IPMI 2019