MemBrain : Membrane segmentation in 3D for cryo-ET (by @teamtomo)
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Updated
Jul 17, 2024 - Python
MemBrain : Membrane segmentation in 3D for cryo-ET (by @teamtomo)
Subtomogram averaging tutorials
Python scripts to quantiatively describe Arp2/3 complex organization on travelling Actin Waves
CryoCARE : denoising tomograms for cryo-ET (by @juglab)
Some scripts to facilitate subtomogram-averaging workflows.
Plugin to run MemBrain software within Scipion
A pipeline to detect domains in cryo-EM density map by parsing domains from AlphaFold databases and fitting into the map for the best hits.
Python package for segmentation and analysis of Cryo-ET
Electron tomography toolkit: geometric picking and sub-volume averaging
Denoising and segmentation networks for cryoET based on U-net architecture implemented in Pytorch
Cellular content mining and particle localization
A tool to normalize CryoET data by matching amplitude spectrums.
2D NN-based particle picking from sparse labels
Python scritps for rendering and distance analysis of proteins (proteasome) and segmentations (poly-GA aggregates) in Cryo-ET
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