OX COI Messenger - a Flutter app for the COI (Chat Over IMAP) standard
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Updated
Oct 28, 2020 - Dart
OX COI Messenger - a Flutter app for the COI (Chat Over IMAP) standard
AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequences.
MalariaGEN Plasmodium falciparum Community Project analysis using coiaf
This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904
Waste Management for Captain of Industry game
ČOI adblock list
Complexity of Infection Estimation with Allele Frequencies
Unpowered Balancers for Captain of Industry game
PipeCraft2 is a Graphical User Interface (GUI) for various metabarcoding pipelines
Datasets and code used to create figures in "Hajibabaei et al., 2019. COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems. PLoS ONE 14(9): e0220953."
Snakemake bioinformatic pipeline to process COI mtDNA metabarcodes
A set of Xcode file templates to use when developing on OX Coi
This is the repository for the PAP-DPB2 Phylogenetic analysis project.
This repository contains the scripts used to process Illumina MiSeq 18S, ITS2, and CO1 metabarcodes for Jesse Hoage's Master's thesis (2018). The ammended CO1 reference set is also included here (CO1 Classifier v2.1).
Data flow to process COI metabarcodes
A python script that makes it easy to analyze multiple COIs (Communities of Interest) and generate heat maps and metrics of interest.
COI sequences files used to test the COI Classifier Web Portal
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