Aggregate and analyse information on clinical trials from public registers

R package to fetch and explore clinical trials data from freely available registries. Fetch data in bulk, customize data and build comprehensive html reports. Currently, it supports the ClinicalTrials.gov registry and CTTI AACT (Access to Aggregate Content of ClinicalTrials.gov).

Data analysis produces data in the form of results. Although integrating and putting findings into context is a cornerstone of scientific work, data of this type is often neglected. The analysis results data model is a proposed solution to this issue that combines analysis standards with a common data model.

: a R pipeline to identify the most important predictor qualitative and quantitative variables for discrimination of your variable of interest like genotype or sex or response to treatment by using phenotypic or clinical data from different diseases

Survival modelling using Cox proportional hazard regression model

An R package for TCGA clinical data mining

Code for the CDISC {admiral} hackathon, Feb 2023. The objective of this hackathon is to develop ADaM datasets in R using the ADaM in R Asset Library {admiral} and other Pharmaverse packages.

The web ui (R-Shiny application) for Pheno-Ranker, a tool designed for performing semantic similarity analysis on phenotypic data structured in JSON format, such as Beacon v2 Models or Phenopackets v2

Website to support the R in Pharma 2023 workshop on the ARDM

LCARS-C is a lightweight clinical data acquisition and management software for clinical research and other data-focused research projects.

prostateredcap: R package and workflow for a reproducible clinical-genomic database of prostate cancer

Gene Enrichment Identifier

R package to parse datasets into SQLite-friendly tables

This project transforms demographics, clinical scenario, and respiratory support data for patients hospitalized at UCSF into a daily snapshot of clinical severity stage for each patient. Ordinal scale adapted from WHO’s Clinical Progression Scale, which aims to capture patient clinical trajectory and resource usage over time.

echoseq R package - Synthetic-data generator: replication and simulation of molecular and clinical data

This project evaluates spatial and temporal correlation of UCSF antibiogram data

This project evaluates the relationship between Area Deprivation Index (ADI), clinical severity, length of stay (LOS), and readmission among COVID-19 patients at UCSF

This project imports and analyzes demographic and Covid staging data for COVID-19 patients hospitalized at UTSW

This project builds and validates a CDI risk assessment model based on UCSF inpatient data