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7 public repositories
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Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Updated
Jul 19, 2024
Rust
Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain
Updated
Apr 22, 2024
JavaScript
Yet Another TAxonomy Handler.
Flu clade and mutation frequencies
Updated
Jun 10, 2024
TypeScript
A lightweight tool to find clusters of samples within a phylogeny.
Updated
Jun 17, 2024
Rust
This script allows to get Enterobacter cloacae complex hsp60 cluster from a multi-Fasta file
Code for calculating correlations between clade indicators.
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