Miscellaneous differential gene expression scripts in R
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Updated
May 23, 2016 - R
Miscellaneous differential gene expression scripts in R
A collection of useful bioinformatics scripts.
Scripts used to created manuscript figures
Bioinformatics scripts in Python
(Archived) This page is a record of my first formal NGS Project for Dr. Matesic of University of South Carolina (USC).
This program calculates the conservation index of a set of DNA or protein sequences
Taxonomy Classifer Using Gene Sequence.
Command line utility written in NodeJS to decode SAM flags to explain what they mean.
Scripts to download the PacBio, ONT and MiSeq datasets used in https://www.nature.com/articles/s41598-017-03996-z and run the pipelines as described in the paper or simply download the final assemblies as generated by the authors.
A script which counts the gaps in FASTA DNA sequences and reports their proportions in a CSV file
Coord2gene is a simple Python script that converts genomic coordinates to gene names. Useful for mapping SNPs to genes, and optimized for speed.
Synchronise Nanopore reads with a server.
chaos game representation for DNA seqs in Perl.
Converts raw phenotypic character information generated by MicroPIE into a coded character matrix (nexus file).
SLURM job temps @UAlbany
A collection of bioinformatics and data mining scripts
Extracts information from GFF and prepare them in bed format
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