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docker-snakemake
docker-snakemake PublicDockerfiles to create best practice containers for running and developing Snakemake workflows
Dockerfile 1
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metaseqlite
metaseqlite PublicA Python 3 compatible version of the major features of metaseq, a framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
Python
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Convert GTF to TSS BED file
Convert GTF to TSS BED file 1#!/bin/sh
2# Creates a sorted BED file with all transcript TSS locations with the Ensembl transcript id for the name column
3# This script does this for the Mouse vM19 annotaions, but should work just fine with Human GTF as well
45wget ftp:https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M19/gencode.vM19.annotation.gtf.gz
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Create NCBI RefSeq Select BED12 file
Create NCBI RefSeq Select BED12 file 1## Create NCBI RefSeq Select BED12 file
23This gist shows you how to create a BED file in [BED12 format](https://ensembl.org/info/website/upload/bed.html) containing every protein-coding NCBI RefSeq Select gene with the exons annotated as blocks in the BED file.
451. First, download a TSV file of [NCBI RefSeq Select](https://www.ncbi.nlm.nih.gov/refseq/refseq_select) genes
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docker-copier
docker-copier PublicAlpine-based Docker container for securely running the copier template rendering software
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Unbound DNS block list cronjob
Unbound DNS block list cronjob 1#!/bin/sh
2# This script updates malware and phishing filters for unbound DNS resolver
3# To use it, place in /etc/cron.daily/unbound-filter-update and chmod 0755 /etc/cron.daily/unbound-filter-update
45# Get filter of potentially unwanted programs (PUPs)
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