aPhyloGeo is a multiplatform application for the analysis of genetic and climatic conditions.
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Updated
Jul 9, 2024 - Shell
aPhyloGeo is a multiplatform application for the analysis of genetic and climatic conditions.
A set of geographic areas (named entities and boundaries) that provides a mapping between natural biogeographic and common administrative entities.
📦 An R package to compare several methods of bioregionalizations
Estimation of the number of colonization events between islands of the same archipelago for a species. It uses rarefaction curves to control for both field and genetic sample sizes as it was described in Coello et al. (2022) <doi:10.1111/jbi.14341>.
Estimation of the number of colonization events between islands of the same archipelago for a species. It uses rarefaction curves to control for both field and genetic sample sizes as it was described in Coello et al. 2022 (doi:10.1111/jbi.14341).
Phylogenetic biogeography SSE models for large state spaces
BioModelos is a collaborative online system to map species distributions. This repository stores functions to automate the construction of Species Distribution Models (SDM) from databases gathered, managed and curated by The Alexander Von Humboldt Institute and a network of experts in order to be evaluated and refined.
Phylogenetic tree tables and other phylogenetic utilities. (Functions include: prt(tr) and other utilities. Also includes the PhyloNetworks tree object/reader/writer, with minimal dependencies.)
Tools for Modeling Niches and Distributions of Species
A Python Package for Adaptive Spatio-Temporal Exploratory Model (AdaSTEM)
Repository for 'Birds that nest exclusively on islands have smaller clutches'. Ornithology 2024.
Work with species distributions in Julia
Julia framework for spatial ecology - data types and utilities
Pattern-oriented ensemble modelling and simulation (with spatially explicit populations)
Processing NEON soil microbe marker gene sequence data into ASV tables.
Mapeamento da distribuição geográfica de espécies na região Neotropical: manual de aulas práticas
R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
This repository is a supplementary information repository from García-Merchán et al... 2020 publication.
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