Local version of the phage identification and analysis web server (tool set)
-
Updated
Aug 28, 2024 - Python
Local version of the phage identification and analysis web server (tool set)
Cocktail is a program for mathematical modelling of bacteriophage (phage) infection kinetics. Cocktail is a Windows 64-bit program and the source code can be developed in the directions that users see fit. This will be updated soon with a link to the scientific publication describing the program.
Detect elevations and gaps in read coverage on metagenome contigs or assembled genomes
TrIdent- Transduction Identification: Automatic detection, classification and characterization of active transduction events in microbiomes.
Langevin dynamics simulation of bacteriophage-bacteria interaction
PhageOrder is a python package designed to reorder phage genomes based on its terminase subunit.
Configurable short read de novo assembly container using SPAdes and bbmap
Prediction of bacterial host for phage
Scripts used to prepare the "Self-splicing introns in genes of Bastillevirinae bacteriophages" paper
📑Reports and bioinformatics analyses from internship in Indonesia
Creation of a local database for bacteriophages
Add a description, image, and links to the bacteriophage topic page so that developers can more easily learn about it.
To associate your repository with the bacteriophage topic, visit your repo's landing page and select "manage topics."