Scripts associated to transcriptome-wide analysis of the effects of systematic knock down of splicing factors and regulators using siRNAs in HeLa cells

An R package to perform Spatial dissimilarity analysis in single cells

Repository for method to analyse the relationship between germline variants and somatic mutations and alternative splicing in breast cancer patients based on RNA-Seq data,

AltAnalyze version 3 is a Python3 library to integrate and compare diverse RNA isoform datasets.

An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level.

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis

Description of the computational workflow employed for the single-cell Alternative Splicing (AS) analysis from Costea et al., 2024

Interactive R package to quantify, analyse and visualise alternative splicing

Alternative Splicing ToolKit

This repository is for our 2024 manuscript, Cell-type-specific alternative splicing in the cerebral cortex of a Schinzel-Giedion Syndrome patient variant mouse model

Spicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data

This repository is the current repository for our Jones et al. 2024 manuscript titled Long-read RNA sequencing identifies region- and sex-specific C57BL/6J mouse brain mRNA isoform expression and usage.

SimSpliceEvol: Alternative splicing-aware simulation of biological sequence evolution

BRIE: Bayesian Regression for Isoform Estimate in Single Cells

Use Thor's Axe to cut exons into their evolutionary building blocks ⚡

Analysis of RNA-Seq data for approximately 3500 breast tumors from the SCAN-B project to investigate differential splicing patterns between molecular subtypes and clinical phenotypes

A network-based approach for exon set enrichment

This GitHub repo supports a project, led by Delphine Galiana. It explores the innate immune response to viral infections, focusing on the role of plasmacytoid dendritic cells (pDCs) and the impact of alternative splicing in their antiviral response.