AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
-
Updated
Jul 7, 2022 - Python
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
Lightweight and Fast; RNA-seq quantification at the event-level
Discover differential transcript usage from polyA-captured single cell RNA-seq data
BRIE: Bayesian Regression for Isoform Estimate in Single Cells
Interactive R package to quantify, analyse and visualise alternative splicing
Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level.
ISOform-guided prediction of epiTOPEs in cancer
NGS Tutorial
📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.
Vials is a Caleydo Web application for visualizing alternative splicing based on mRNAseq data.
Docker to run rMATS for splicing quantification and analysis
Computational biology pipeline that quantifies RNA splicing and performs sQTL mapping
Docker to run MISO for splicing quantification and analysis
Reproducibility of "Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues."
The statistical utility for RBP functions (SURF)
Use Thor's Axe to cut exons into their evolutionary building blocks ⚡
IsoAligner: dynamic mapping of amino acid positions across protein isoforms
Functional impact of cancer-specific isoform switching events: Visualization via STRING interaction network
Add a description, image, and links to the alternative-splicing topic page so that developers can more easily learn about it.
To associate your repository with the alternative-splicing topic, visit your repo's landing page and select "manage topics."