Reading Genomic Files and provide data as API
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Updated
Feb 9, 2017 - Python
Reading Genomic Files and provide data as API
NGS Tutorial
Docker to run SUPPA for splicing quantification and analysis
Docker to run MISO for splicing quantification and analysis
Docker to run Whippet for splicing quantification and analysis
Vials is a Caleydo Web application for visualizing alternative splicing based on mRNAseq data.
📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.
Mobile App Social Currency and Geolocated Marketplace
Computational biology pipeline that quantifies RNA splicing and performs sQTL mapping
The package RNAseqAnalysis does the complete analysis of RNA seq data starting from raw reads. It provides the user with differnt functions like generation of qc report, filtering, assembly and GO-term annotation, differential expression analysis and heatmap generation, and Alternative splicing-site prediction
Reproducibility of "Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues."
Docker to run rMATS for splicing quantification and analysis
⚔️Find splicing-led, functional changes of the proteome.
A supervised methodology for analyzing dysregulation in splicing machinery: an application in cancer diagnosis.
Performing Cancer Diagnosis via an Isoform Level Expression Ranking-based LSTM Model
This repository contains all the studies made in colaboration with IMIBIC
Dynamic Isoform spliCing Estimator via sequencing data
A snakemake workflow to perform Alternative Splicing analysis from RNA-Seq with SUPPA2.
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