AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
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Updated
Jul 7, 2022 - Python
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
BRIE: Bayesian Regression for Isoform Estimate in Single Cells
Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
ISOform-guided prediction of epiTOPEs in cancer
A network-based approach for exon set enrichment
⚔️Find splicing-led, functional changes of the proteome.
Spicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data
Use Thor's Axe to cut exons into their evolutionary building blocks ⚡
A tool to model the evolution and structural impact of alternative splicing
Computational biology pipeline that quantifies RNA splicing and performs sQTL mapping
IsoAligner: dynamic mapping of amino acid positions across protein isoforms
A supervised methodology for analyzing dysregulation in splicing machinery: an application in cancer diagnosis.
A snakemake workflow to perform Alternative Splicing analysis from RNA-Seq with SUPPA2.
Docker to run rMATS for splicing quantification and analysis
SimSpliceEvol: Alternative splicing-aware simulation of biological sequence evolution
Dynamic Isoform spliCing Estimator via sequencing data
Performing Cancer Diagnosis via an Isoform Level Expression Ranking-based LSTM Model
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