An open-source platform for developing protein models beyond AlphaFold.
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Updated
Jun 26, 2024 - Python
An open-source platform for developing protein models beyond AlphaFold.
Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
Run AlphaFold2 (and multimer) step by step
RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding
This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
A curated list of awesome protein design research, software and resources.
Screen interactions with AlphaFold-Multimer
GUI for running jobs with a local installation of AlphaFold2. Supports submission to queuing systems.
A Tufts Research Technology Workshop detailing how to use AlphaFold 2 on the Tufts HPC cluster
Map Alphafold PAE values on a model
Repo to build AF models of endogeneous ligands
RAPSAP is a comprehensive archive of protein structures that pertain specifically to autophagy, aimed at improving structural understanding of the biological process
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