A comprehensive and customizable R package for microbiome analysis.
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Updated
Dec 9, 2022 - R
A comprehensive and customizable R package for microbiome analysis.
code to reproduce AIH results
The following codes are focused on microbiome analysis, alpha, beta and relative abundance differences.
Repository for course project in Bioinformatics Institute 2023-2024
Microbiome Diversity Inspector - A platform for visual analysis of microbiome data.
ESKRIM is a reference-free tool that compares microbial richness in shotgun metagenomic samples by counting k-mers
Microbiome Data Analysis
Repository for report for study project «Human Microbiome Research» by Blastim
Alpha, beta and gamma diversities are computed and visualized using formulas and using the R package vegetarian.
metaGEENOME is a 16S rRNA metagenomic analysis tool that encompasses nearly all steps of downstream analysis.
Take advantage of the adehabitat packages in R to determine ecological community richness: including alpha, beta, and gamma diversity!
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