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Psychosis identification from initial admission notes
EMNLP'22 | MedCLIP: Contrastive Learning from Unpaired Medical Images and Texts
pharmpy is an umbrella library for searching the FDA NDC directory, Established Pharmacologic Class (EPC), Anatomical Therapeutic Chemical (ATC) through RxNav, and some other APIs on RxNav.
Segment Anything combined with CLIP
The simplest, fastest repository for training/finetuning medium-sized GPTs.
SeqScore: Scoring for named entity recognition and other sequence labeling tasks
A collection of research papers and software related to explainability in graph machine learning.
Dataset containing 7,025 discharge summary notes from the MIMIC III dataset annotated for 7 SBDHs
Easy Language Model Pretraining leveraging Huggingface's Transformers and Datasets
Repository to transform the MIMIC-III dataset into a flat hierarchy FHIR format
ETUDE (Evaluation Tool for Unstructured Data and Extractions) is a Python-based tool that provides consistent evaluation options across a range of annotation schemata and corpus formats
Infrastructure for hosting the Clinical TempEval shared tasks
Preprocessing and analysis for training SNOMED-CT concept embeddings from CORD-19 corpus
Dataset for the NLPMC @ NAACL 2021 Paper: Assertion Detection in Clinical Notes: Medical Language Models to the Rescue?
Library for clinical NLP with spaCy.
NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications
Small Java/Scala project for loading MIMIC-III datafiles into a persistent Spark SQL database.