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Starred repositories
A simple gene co-expression analyses workflow powered by tidyverse and graph analyses
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
toolkit for analyzing genome editing experiments
Synthego ICE - Inference of CRISPR Editing software
Proteomics search & quantification so fast that it feels like magic
Tools to process and analyze deep sequencing data.
Official Anytype client for MacOS, Linux, and Windows
Bayesian Consensus Clustering, packaged up from code by Eric F. Lock
🎯 Human transcription factor target genes from 6 databases in convenient R format.
R package for integrating and analyzing multiple single-cell datasets
Repository for the textbook 'Improving Your Statistical Inferences' by Daniel Lakens
A Zotero plugin to remove the broken & duplicate attachment link of the bibliography
Zotero plugin for auto-fetching citation counts from various sources
Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!
A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence
Comprehensive design of CRISPR gRNAs for nucleases and base editors
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency
Repository for PlateEditor, the web application allowing management of plate layout, results visualization and analysis
Foldseek enables fast and sensitive comparisons of large structure sets.
Methods and code for deriving an Index of DNaseI hypersensitive sites
Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data