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Development #153

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wants to merge 59 commits into from
Closed

Development #153

wants to merge 59 commits into from

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AnnaChristina
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dependabot bot and others added 30 commits August 23, 2022 05:23
Bumps [pep8-naming](https://github.com/PyCQA/pep8-naming) from 0.11.1 to 0.13.2.
- [Release notes](https://github.com/PyCQA/pep8-naming/releases)
- [Changelog](https://github.com/PyCQA/pep8-naming/blob/main/CHANGELOG.rst)
- [Commits](PyCQA/pep8-naming@0.11.1...0.13.2)

---
updated-dependencies:
- dependency-name: pep8-naming
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
* wald test implementation still ongoing
* the tested parameter (log fold change / fold change) table is always (genes, type pairs) in varm
* tested parameters are set to nan if multi coefficient tests are used to indicate that no trivial summary of multiple coefficients to a fold change is possible. if condition test with a single condition is used, this single coefficient is reported.
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 2.1.4 to 4.3.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v2.1.4...v4.3.0)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Bumps [pre-commit-hooks](https://github.com/pre-commit/pre-commit-hooks) from 3.4.0 to 4.4.0.
- [Release notes](https://github.com/pre-commit/pre-commit-hooks/releases)
- [Changelog](https://github.com/pre-commit/pre-commit-hooks/blob/main/CHANGELOG.md)
- [Commits](pre-commit/pre-commit-hooks@v3.4.0...v4.4.0)

---
updated-dependencies:
- dependency-name: pre-commit-hooks
  dependency-type: direct:development
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
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Hi @AnnaChristina,

It looks like this pull-request is has been made against the theislab/ncem master or main branch.
The master/main branch should always contain code from the latest release.
Because of this, PRs to master/main are only allowed if they come from any theislab/ncem release or patch branch.

You do not need to close this PR, you can change the target branch to development by clicking the "Edit" button at the top of this page.

Thanks again for your contribution!

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