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Tumor Genome Analysis Core

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  1. BLADE BLADE Public

    BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data

    HTML 24 4

  2. ACE ACE Public

    Absolute Copy Number Estimation using low-coverage whole genome sequencing data

    R 12 5

  3. OncoBLADE OncoBLADE Public

    Hidden RNA profiles of cells in the tumor microenvironment accurately revealed by malignant cell fraction-informed deconvolution

    Jupyter Notebook 4

  4. falco falco Public

    Amplicon variant caller

    R 1

  5. QDNAseq.dev QDNAseq.dev Public

    R 1

  6. ddPCR ddPCR Public

    R 1

Repositories

Showing 10 of 18 repositories
  • OncoBLADE Public

    Hidden RNA profiles of cells in the tumor microenvironment accurately revealed by malignant cell fraction-informed deconvolution

    tgac-vumc/OncoBLADE’s past year of commit activity
    Jupyter Notebook 4 MIT 0 0 0 Updated Jun 24, 2024
  • BLADE Public

    BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data

    tgac-vumc/BLADE’s past year of commit activity
    HTML 24 MIT 4 1 1 Updated Apr 3, 2024
  • QDNAseq.snakemake Public
    tgac-vumc/QDNAseq.snakemake’s past year of commit activity
    JavaScript 1 1 0 0 Updated Mar 12, 2024
  • TCGA_purity Public
    tgac-vumc/TCGA_purity’s past year of commit activity
    R 0 0 0 0 Updated Nov 2, 2023
  • ACE Public

    Absolute Copy Number Estimation using low-coverage whole genome sequencing data

    tgac-vumc/ACE’s past year of commit activity
    R 12 5 3 1 Updated May 30, 2023
  • spatstat_vectra Public Forked from anoyaro84/spatstat_vectra

    Marked point process modeling of Vectra data

    tgac-vumc/spatstat_vectra’s past year of commit activity
    HTML 0 1 0 0 Updated May 3, 2023
  • lgg-snakemake Public Forked from bo5man/lgg-snakemake

    Snakemake pipeline for analysis of methylation data of long and short survivors of 1p/19q-codeleted oligodendroglioma

    tgac-vumc/lgg-snakemake’s past year of commit activity
    R 0 1 0 0 Updated Aug 30, 2021
  • RNA-seq Public

    RNA-seq analysis pipeline based on Snakemake

    tgac-vumc/RNA-seq’s past year of commit activity
    Python 0 5 0 0 Updated Jul 2, 2021
  • translocation-snake Public

    Translocation detection pipeline by next generation sequencing. A combined approach of BreaKmer, Gridss, Wham and novoBreak.

    tgac-vumc/translocation-snake’s past year of commit activity
    JavaScript 0 0 0 0 Updated Nov 24, 2020
  • small_scripts Public

    small things to be shared with others.

    tgac-vumc/small_scripts’s past year of commit activity
    R 0 0 0 0 Updated Jun 10, 2020
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