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Use multi stage docker image build
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@wlad
wlad committed Sep 12, 2020
1 parent c6e6109 commit 50f30b6
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219 changes: 114 additions & 105 deletions Dockerfile
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# FROM postgres:11.5-alpine

# # Set default values for database user and passwords
# ARG EHRBASE_USER="ehrbase"
# ARG EHRBASE_PASSWORD="ehrbase"
# ENV EHRBASE_USER=${EHRBASE_USER}
# ENV EHRBASE_PASSWORD=${EHRBASE_PASSWORD}

# # Set Postgres data directory to custom folder
# ENV PGDATA="/var/lib/postgresql/pgdata"

# # Create custom data directory and change ownership to postgres user
# RUN mkdir -p ${PGDATA}
# RUN chown postgres: ${PGDATA}
# RUN chmod 0700 ${PGDATA}

# # Define Postgres version for easier upgrades for the future
# ENV PG_MAJOR=11.9

# # Adding locales to an alpine container as described
# # here: https://github.com/Auswaschbar/alpine-localized-docker
# # set our environment variable
# ENV MUSL_LOCPATH="/usr/share/i18n/locales/musl"

# # install libintl
# # then install dev dependencies for musl-locales
# # clone the sources
# # build and install musl-locales
# # remove sources and compile artifacts
# # lastly remove dev dependencies again
# RUN apk --no-cache add libintl && \
# apk --no-cache --virtual .locale_build add cmake make musl-dev gcc gettext-dev git && \
# git clone https://gitlab.com/rilian-la-te/musl-locales && \
# cd musl-locales && cmake -DLOCALE_PROFILE=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr . && make && make install && \
# cd .. && rm -r musl-locales && \
# apk del .locale_build

# # Copy init scripts to init directory
# COPY ./scripts/create-ehrbase-user.sh /docker-entrypoint-initdb.d/

# # Initialize basic database cluster
# RUN sh -c "/usr/local/bin/docker-entrypoint.sh postgres & " && \
# sleep 20 && \
# echo "Database initialized"

# # Allow connections from all adresses & Listen to all interfaces
# RUN echo "host all all 0.0.0.0/0 scram-sha-256" >> ${PGDATA}/pg_hba.conf
# RUN echo "listen_addresses='*'" >> ${PGDATA}/postgresql.conf

# # Install python and dependencies
# RUN apk add --update postgresql-dev \
# build-base \
# git \
# flex \
# bison

# # Install temporary_tables plugin
# COPY ./scripts/install-temporal-tables.sh .
# RUN chmod +x ./install-temporal-tables.sh
# RUN sh -c "./install-temporal-tables.sh"

# # Install jsquery plugin
# COPY ./scripts/install-jsquery.sh .
# RUN chmod +x ./install-jsquery.sh
# RUN sh -c "./install-jsquery.sh"

# # Prepare database schemas
# COPY ./scripts/start-databases.sh .
# RUN chmod +x ./start-databases.sh
# RUN sh -c "./start-databases.sh"

# # Cleanup
# RUN rm -f -r ./jsquery
# RUN rm -f -r ./temporal_tables

# EXPOSE 5432

# # INSTALL JAVA 11 JDK
# RUN apk --no-cache add openjdk11 --repository=https://dl-cdn.alpinelinux.org/alpine/edge/community \
# && java --version

# # INSTALL MAVEN
# ENV MAVEN_VERSION 3.6.3
# ENV MAVEN_HOME /usr/lib/mvn
# ENV PATH $MAVEN_HOME/bin:$PATH
# RUN wget https://archive.apache.org/dist/maven/maven-3/$MAVEN_VERSION/binaries/apache-maven-$MAVEN_VERSION-bin.tar.gz && \
# tar -zxvf apache-maven-$MAVEN_VERSION-bin.tar.gz && \
# rm apache-maven-$MAVEN_VERSION-bin.tar.gz && \
# mv apache-maven-$MAVEN_VERSION /usr/lib/mvn \
# && mvn --version

# RUN ls -la
# RUN ls -la /home
# RUN ifconfig
# RUN cat /etc/hosts

FROM maven:3.6.3-openjdk-11-slim AS builder
WORKDIR /ehrbase

FROM postgres:11.5-alpine AS builder

# Set default values for database user and passwords
ARG EHRBASE_USER="ehrbase"
ARG EHRBASE_PASSWORD="ehrbase"
ENV EHRBASE_USER=${EHRBASE_USER}
ENV EHRBASE_PASSWORD=${EHRBASE_PASSWORD}

# Set Postgres data directory to custom folder
ENV PGDATA="/var/lib/postgresql/pgdata"

# Create custom data directory and change ownership to postgres user
RUN mkdir -p ${PGDATA}
RUN chown postgres: ${PGDATA}
RUN chmod 0700 ${PGDATA}

# Define Postgres version for easier upgrades for the future
ENV PG_MAJOR=11.9

# Adding locales to an alpine container as described
# here: https://github.com/Auswaschbar/alpine-localized-docker
# set our environment variable
ENV MUSL_LOCPATH="/usr/share/i18n/locales/musl"

# install libintl
# then install dev dependencies for musl-locales
# clone the sources
# build and install musl-locales
# remove sources and compile artifacts
# lastly remove dev dependencies again
RUN apk --no-cache add libintl && \
apk --no-cache --virtual .locale_build add cmake make musl-dev gcc gettext-dev git && \
git clone https://gitlab.com/rilian-la-te/musl-locales && \
cd musl-locales && cmake -DLOCALE_PROFILE=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr . && make && make install && \
cd .. && rm -r musl-locales && \
apk del .locale_build

# Copy init scripts to init directory
COPY ./scripts/create-ehrbase-user.sh /docker-entrypoint-initdb.d/

# Initialize basic database cluster
RUN sh -c "/usr/local/bin/docker-entrypoint.sh postgres & " && \
sleep 20 && \
echo "Database initialized"

# Allow connections from all adresses & Listen to all interfaces
RUN echo "host all all 0.0.0.0/0 scram-sha-256" >> ${PGDATA}/pg_hba.conf
RUN echo "listen_addresses='*'" >> ${PGDATA}/postgresql.conf

# Install python and dependencies
RUN apk add --update postgresql-dev \
build-base \
git \
flex \
bison

# Install temporary_tables plugin
COPY ./scripts/install-temporal-tables.sh .
RUN chmod +x ./install-temporal-tables.sh
RUN sh -c "./install-temporal-tables.sh"

# Install jsquery plugin
COPY ./scripts/install-jsquery.sh .
RUN chmod +x ./install-jsquery.sh
RUN sh -c "./install-jsquery.sh"

# Prepare database schemas
COPY ./scripts/start-databases.sh .
RUN chmod +x ./start-databases.sh
RUN sh -c "./start-databases.sh"

# Cleanup
RUN rm -f -r ./jsquery
RUN rm -f -r ./temporal_tables

EXPOSE 5432

# INSTALL JAVA 11 JDK
RUN apk --no-cache add openjdk11 --repository=https://dl-cdn.alpinelinux.org/alpine/edge/community \
&& java --version

# INSTALL MAVEN
ENV MAVEN_VERSION 3.6.3
ENV MAVEN_HOME /usr/lib/mvn
ENV PATH $MAVEN_HOME/bin:$PATH
RUN wget https://archive.apache.org/dist/maven/maven-3/$MAVEN_VERSION/binaries/apache-maven-$MAVEN_VERSION-bin.tar.gz && \
tar -zxvf apache-maven-$MAVEN_VERSION-bin.tar.gz && \
rm apache-maven-$MAVEN_VERSION-bin.tar.gz && \
mv apache-maven-$MAVEN_VERSION /usr/lib/mvn \
&& mvn --version

RUN ls -la
RUN ls -la /home
RUN ifconfig
RUN cat /etc/hosts

# CACHE EHRBASE DEPENDENCIES
COPY ./pom.xml ./pom.xml
COPY ./api/pom.xml ./api/pom.xml
COPY ./application/pom.xml ./application/pom.xml
Expand All @@ -112,16 +110,27 @@ COPY ./jooq-pq/src ./jooq-pq/src
COPY ./rest-ehr-scape/src ./rest-ehr-scape/src
COPY ./rest-openehr/src ./rest-openehr/src
COPY ./service/src ./service/src
RUN mvn compile dependency:go-offline
RUN mvn compile dependency:go-offline \
-Dflyway.skip=true \
-Djooq.codegen.skip=true \
-Dmaven.main.skip

# COMPILE EHRBASE
RUN su - postgres -c "pg_ctl -D ${PGDATA} -w start" \
&& mvn compile

# BUILD EHRBASE (AND STORE ALL DEPENDENCIES)
COPY . .
RUN ls -la ./
RUN mvn package -Dmaven.javadoc.skip=true
RUN cp application/target/application-0.13.0.jar /tmp/app.jar
# PACKAGE EHRBASE .JAR
RUN mkdir -p /home/ehrbase
COPY . /home/ehrbase
RUN ls -la /home/ehrbase
RUN su - postgres -c "pg_ctl -D ${PGDATA} -w start" \
&& mvn package -Dmaven.javadoc.skip=true
RUN cd /home/ehrbase \
&& cp application/target/application-0.13.0.jar /tmp/app.jar



# FINAL IMAGE WITH JRE AND JAR ONLY
FROM openjdk:11-jre-slim AS pusher
WORKDIR /ehrbase
COPY --from=builder /tmp/app.jar .
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