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πŸš€ seqfu - Sequece Fastx Utilities

Nim 103 7 Updated Jul 15, 2024

Nextflow pipeline to generate simulated amplicon datasets

Nextflow 1 Updated Jul 8, 2024

Β΅binfie blog

HTML 14 6 Updated Aug 18, 2024

Scripts and docs from the datascienceatqib group

Jupyter Notebook 4 Updated Jun 21, 2024

A virtual dog-sitter that tracks, classifies, and responds to dog audio.

Python 9 2 Updated Mar 21, 2022

A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).

Python 89 31 Updated Dec 16, 2023

Contains a simple live demo of MNIST training and classification using Nim + Arraymancer + Plotly

Nim 43 2 Updated May 31, 2018

CLI client for the Mastodon social network API

Go 193 9 Updated Jun 30, 2024

Template of a (PDF/HTML) report document using pandoc

CSS 1 Updated Jun 21, 2024

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

Nextflow 108 33 Updated Aug 13, 2024

A flexible pipeline for complete analysis of bacterial genomes

Nextflow 395 67 Updated Aug 17, 2024

Examples in the MLX framework

Python 5,725 821 Updated Aug 21, 2024

πŸš€ Level up your GitHub profile readme with customizable cards including LOC statistics!

Python 10,397 78 Updated Jun 3, 2024

A tiling window manager for macOS based on binary space partitioning

C 22,908 635 Updated Aug 20, 2024

Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named StORFs (Stop - Open Reading Frames)

Python 15 1 Updated Feb 26, 2024

Taxon Information Query - fast, offline querying of NCBI Taxonomy and related data

Python 51 2 Updated Nov 19, 2023

This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED database.

Python 17 2 Updated Nov 29, 2023

πŸ¦ πŸ“‡ Microbial genomes-to-report pipeline

Python 51 3 Updated Aug 13, 2024

πŸ€– Just a command runner

Rust 19,298 431 Updated Aug 20, 2024

frame-shift correction for long-read (meta)genomics

Perl 29 5 Updated Dec 11, 2023

⚑ β™’ Rapid prokaryotic genome annotation

Perl 801 221 Updated Apr 10, 2024

Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.

Perl 61 7 Updated Aug 3, 2024

Nim compiler action

Shell 2 1 Updated Dec 7, 2020

Experimental UI Library for Nim

Nim 65 1 Updated Apr 27, 2024

Nim wrapper for the Edlib library

Nim 4 Updated May 18, 2019

Simple dataframes in nim

Nim 2 Updated Sep 1, 2023

simple reader and writer for gzipped (and regular) files

Nim 5 1 Updated Apr 22, 2020

Creates screenshots based on terminal command output

Go 397 19 Updated Aug 14, 2024

Command line arguments parser that will make you smile (port of docopt to Nim)

Nim 211 24 Updated Sep 18, 2023
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