Commits

Commits on Jan 22, 2019

1. Fix some logger calls; 2. Split genome using pre-scan approach; added -Z option to set minimum zscore to perform Viterbi; 3. add the fat-jar file

Tao Liu
authored and
Tao Liu
committedJan 22, 2019

Commits on Jan 21, 2019

Remove codes related to old bigwig operations. Add logger to Main Driver./2

Tao Liu
authored and
Tao Liu
committedJan 21, 2019
Remove codes related to old bigwig operations. Add logger to Main Driver.

Tao Liu
authored and
Tao Liu
committedJan 21, 2019

Commits on Jan 20, 2019

outdated jars for versions 1.1 and lower
evantarbell
committedJan 20, 2019

Commits on Jan 19, 2019

Added third party jars for compile
evantarbell
committedJan 19, 2019

Commits on Jan 18, 2019

Remove year old files

Tao Liu
authored and
Tao Liu
committedJan 18, 2019

Commits on Dec 7, 2018

Edit README to make genome file directly from BAM file
evantarbell
committedDec 7, 2018
Edit README to make genome file directly from BAM file
evantarbell
committedDec 7, 2018

Commits on Nov 28, 2018

bug fix on argument parser
evantarbell
committedNov 28, 2018
typo in sort command
evantarbell
committedNov 28, 2018

Commits on Nov 22, 2018

Removed BIgWig requirement and generate own signal file
evantarbell
committedNov 22, 2018
Removed BIgWig requirement and generate own signal file
evantarbell
committedNov 22, 2018

Commits on Sep 12, 2018

Corrected K-means default parameter
evantarbell
committedSep 12, 2018

Commits on Aug 24, 2018

added message about samtools versions
evantarbell
committedAug 24, 2018
Weighted Signal generation, minor bug fixes and kmeans model if bw model fails
evantarbell
committedAug 24, 2018
Remove wrong files
evantarbell
committedAug 24, 2018
Signal Generation changed to weighted version, kmeans model used if baum welch fails
evantarbell
committedAug 24, 2018
Merge branch 'master' of https://github.com/LiuLabUB/HMMRATAC
evantarbell
committedAug 24, 2018
Kmeans model in case Baum Welch fail
evantarbell
committedAug 24, 2018

Commits on Jul 12, 2018

Update HMMRATAC_Guide.txt
EvanTarbell
committedJul 12, 2018
Update HMMRATAC_Guide.txt
EvanTarbell
committedJul 12, 2018

Commits on Jul 3, 2018

Update README.md
EvanTarbell
committedJul 3, 2018
Create Make_HMMR_FIles.sh
EvanTarbell
committedJul 3, 2018

Commits on Jun 29, 2018

Update README.md
EvanTarbell
committedJun 29, 2018
Update README.md
EvanTarbell
committedJun 29, 2018
Update README.md
EvanTarbell
committedJun 29, 2018
Update README.md
EvanTarbell
committedJun 29, 2018

Commits on Jun 28, 2018

Update HMMRATAC_Guide.txt
EvanTarbell
committedJun 28, 2018
Update HMMRATAC_Guide.txt
EvanTarbell
committedJun 28, 2018
Update HMMRATAC_Guide.txt
EvanTarbell
committedJun 28, 2018
Update and rename HMMRATAC_Quick_Start.txt to HMMRATAC_Guide.txt
EvanTarbell
committedJun 28, 2018
Update Make_HMMR_Files.py
EvanTarbell
committedJun 28, 2018
Add files via upload
EvanTarbell
committedJun 28, 2018
Updates.
evantarbell
committedJun 28, 2018

Commits on May 3, 2018

Update HMMRATAC_Quick_Start.txt
EvanTarbell
committedMay 3, 2018