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Working from the earth
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Working from the earth
  • Roswell Park Comprehensive Cancer Center
  • Buffalo NY

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@LiuLabUB @taoliulab
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  1. macs3-project/MACS macs3-project/MACS Public

    MACS -- Model-based Analysis of ChIP-Seq

    Cython 695 270

  2. taolib taolib Public

    Tao Liu's open source libraries for bioinformatics (unstable, pre-alpha)

    Python 25 14

  3. HMMRATAC HMMRATAC Public

    Forked from LiuLabUB/HMMRATAC

    HMMRATAC peak caller for ATAC-seq data

    Java 1

  4. SAPPER SAPPER Public

    Forked from LiuLabUB/SAPPER

    SAPPER -- call variance from ChIP-Seq directly

    Python 1

  5. bedGraph to bigWig bedGraph to bigWig
    1
    #!/bin/bash
    2
    
    
    3
    # check commands: slopBed, bedGraphToBigWig and bedClip
    4
    
    
    5
    which bedtools &>/dev/null || { echo "bedtools not found! Download bedTools: <http:https://code.google.com/p/bedtools/>"; exit 1; }
  6. Monitor user time and memory usage o... Monitor user time and memory usage of a process
    1
    #!/bin/bash
    2
    
    
    3
    if [[ $# < 2 ]];then
    4
        echo 'need two parameters: $0 <interval> <pid>'
    5
        exit 1;