This package implements BayesTME, a fully Bayesian method for analyzing ST data without needing single-cell RNA-seq (scRNA) reference data.
If you use this code, please cite the preprint:
BayesTME: A unified statistical framework for spatial transcriptomics
H. Zhang, M. V. Hunter, J. Chou, J. F. Quinn, M. Zhou, R. White, and W. Tansey
bioRxiv 2022.07.08.499377.
Bibtex citation:
@article {Zhang2022.07.08.499377,
author = {Zhang, Haoran and Hunter, Miranda V and Chou, Jacqueline and Quinn, Jeffrey F and Zhou, Mingyuan and White, Richard and Tansey, Wesley},
title = {{BayesTME}: {A} unified statistical framework for spatial transcriptomics},
year = {2022},
doi = {10.1101/2022.07.08.499377},
journal = {bioRxiv}
}
Please run make install_precommit_hooks
from the root of the repository
to install the pre-commit hooks.
When you run any git commit
command these pre-commit hooks will run and format any files that you changed in your commit.
Any unchanged files will not be formatted.
When contributing to this repository, please use the feature branch workflow documented here: https://github.com/tansey-lab/wiki/blob/master/FEATURE_BRANCH_WORKFLOW.md