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Language: Nim
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Nim is a statically typed compiled systems programming language. It combines successful concepts from mature languages like Python, Ada and Modula. Its design focuses on efficiency, expressiveness,…
DataFrame API written in Nim, enabling fast out-of-core data processing
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
Auto-generate a Python module that wraps a Nim module.
Protobuf implementation in pure Nim that leverages the power of the macro system to not depend on any external tools
Chrono a Timestamps, Calendars, and Timezones library for nim.
useful command-line tools written to showcase hts-nim
simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
find large indels (in the blind spot between GATK/freebayes and SV callers)
Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang
Servy is a fast, simple and lightweight micro web-framework for Nim
Readability enhancement tool for bioinformatics data file format
A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser