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Language: C++
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The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
RAxML Next Generation: faster, easier-to-use and more flexible
A Toolkit for Programming Parallel Algorithms on Shared-Memory Multicore Machines
Library code for programming contests
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
Bloom-filter based minimal perfect hash function library
This repository is a fork of Microsoft Research's homomorphic encryption implementation, the Simple Encrypted Arithmetic Library (SEAL). This code wraps the SEAL build in a docker container and pro…
Fast and accurate gene fusion detection from RNA-Seq data
The study & production material for https://www.youtube.com/watch?v=Pc8DfEyAxzg
base-accurate DNA sequence alignments using WFA and mashmap2
A gap-closing software tool that uses long reads to enhance genome assembly.
Population-scale genotyping using pangenome graphs
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It u…
Code examples of fast and simple k-mer counters for tutorial purposes
SMC++ infers population history from whole-genome sequence data.
Scalable gVCF merging and joint variant calling for population sequencing projects
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
microsatellite instability detection using tumor only or paired tumor-normal data