Assets for data8.org

Peregrine: Fast Genome Assembler Using SHIMMER Index

xHLA: Fast and accurate HLA typing from short read sequence data

Materials for Spring 2018 Applied Genomics Course

A Strategy for Building and Using a Human Reference Pangenome

A simple neural network for calling het-/hom-variants from alignments of single molecule reads to a reference

Genome scaffolding based on HiC data in heterozygous and high ploidy genomes

online notebooks for a review of genome sketching

GFA insert into GenomicSQLite

Direct estimation of mean and covariance from single cell RNA seq experiments

Secure multi-party linear regression at plaintext speed

MCscan software available in a Jupyter environment running via the Binder service