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Issues list

setuptools required
#298 by iosonofabio was closed Jun 6, 2024
1
4
Error: Unicode Decode Error
#295 by yb520abab was closed May 22, 2024
1
2
[Question] How to parse .json, .obo, or .owl to get dictionary of enzymes {id_go:{ec_1, ec_2, ..., ec_n}}
#292 by jolespin was closed May 5, 2024
1
Left to right plot in go_plot.py?
#288 by SchwarzMarek was closed Apr 12, 2024
1
goatools v1.3.11 seems cannot handle the header of GAF2.2
#287 by jiaow1018 was closed Mar 12, 2024
Do anyone know the differences between the enriched results and the purifed results after the GOEA analysis of the GOATOOLS?
#285 by Sotdo was closed Dec 25, 2023
2
HolmBonferroni correction generates error with certain p-value lists bug enhancement
#281 by RossLabCSU was closed Nov 10, 2023
3
Issue with goea_nbt3102.ipynb
#279 by Pooryamb was closed Nov 10, 2023
1
Potential bug: "WARNING: GO:0006379 NOT FOUND IN DAG"
#276 by Maxim-Karpov was closed Nov 10, 2023
@tanghaibao
7
AttributeError In godag/gp_taks.py file
#275 by dinavod12 was closed Nov 10, 2023
3
regarding obsolete terms
#269 by Danablesson was closed Nov 24, 2023
function unicode and unichr depreciated in python3
#266 by aipolly was closed Jun 29, 2024
1
p_value calculation with fisher_exact
#262 by Maryam-Haghani was closed Feb 16, 2023
2
(Made a mistake)
#257 by jasperhyp was closed Dec 19, 2022
An example of GOEA with Uniprots
#251 by Maryam-Haghani was closed Jul 1, 2024
6
NOT FOUND IN DAG
#246 by msheltra was closed Jul 20, 2022
3
Issue with plot_gos()
#242 by stefan-dam was closed Oct 13, 2023
1
log = None cannot complete suppress stdout in GOEnrichmentStudyNS
#238 by illumination-k was closed Nov 27, 2022
2
a couple of small issues with the readme
#235 by yotamcons was closed Mar 7, 2022
1
5
download_ncbi_associations() fails while decompressing file
#230 by msbentsen was closed Nov 4, 2021
2
Allow arbitrary letters in Aspect column
#228 by serenalotreck was closed Oct 26, 2021
2
Incorrect data file for notebook : Run a Gene Ontology Enrichment Analysis (GOEA)
#226 by vwongjun was closed Oct 6, 2021
2
AssertionError: **FATAL: NO TAXIDS: gene2go, When I use taxids = [9541]
#218 by WinterFor was closed Jun 25, 2021
6
study (geneIDs) cannot be a numpy array
#214 by wu-diana was closed Nov 27, 2022
1
Request: add methods to convert DAGs to networkx graphs
#206 by AoifeHughes was closed Jul 1, 2024
3
ProTip! What’s not been updated in a month: updated:<2024-06-19.