Commits

History for

Commits on Oct 13, 2023

Remove extra comma in goea_nbt3102.ipyb (thanks @Pooryamb , #279 ) (#280 )
tanghaibao
committedOct 13, 2023

Commits on Mar 4, 2023

update goea_nbt3102 notebook (#265 )
siebrenf
committedMar 4, 2023

Commits on Nov 30, 2022

Added notebook to address #251
dvklopfenstein
committedNov 30, 2022

Commits on Nov 7, 2021

Added function to convert one NCBI Gene tsv file to a Python module.
dvklopfenstein
committedNov 7, 2021

Commits on Nov 5, 2021

Added practical examples using NCBI gene info converted to Python.
dvklopfenstein
committedNov 5, 2021

Commits on Oct 27, 2021

Re-ran new notebook demoing enrichment analysis of genes annotated with human phenotype ontology
dvklopfenstein
committedOct 27, 2021

Commits on Oct 26, 2021

Sorted results to not check in changes solely related to not sorting
dvklopfenstein
committedOct 26, 2021
Added data used to test an enrichment analysis using Human Phenotype Ontology
dvklopfenstein
committedOct 26, 2021
Merge branch 'main' of https://github.com/tanghaibao/goatools
dvklopfenstein
committedOct 26, 2021

Commits on Oct 11, 2021

Rename backround_genes_ncbi.ipynb to background_genes_ncbi.ipynb (#227 )
abearab
committedOct 11, 2021

Commits on May 23, 2021

Add analysis of term counting (thanks @mdanb , #160 ) (#211 )
tanghaibao
committedMay 23, 2021

Commits on Mar 30, 2021

Added new line which includes example from #204 '
dvklopfenstein
committedMar 30, 2021
Added example from issue
dvklopfenstein
committedMar 30, 2021
Add explantion how to access the optional attribute, "definition"
dvklopfenstein
committedMar 30, 2021

Commits on Mar 19, 2021

Update copyright
dvklopfenstein
committedMar 19, 2021

Commits on Dec 17, 2020

remove broken link
dvklopfenstein
committedDec 17, 2020
make image smaller so code below and image can be seen in the same screen
dvklopfenstein
committedDec 17, 2020
update data member name, go2ancestors
dvklopfenstein
committedDec 17, 2020

Commits on Nov 30, 2020

fix typo in markdown
dvklopfenstein
committedNov 30, 2020
Creating documentation for Wang's Semantic Similarity. #183
dvklopfenstein
committedNov 30, 2020

Commits on Sep 29, 2020

better grammar #178
dvklopfenstein
committedSep 29, 2020
Added information on D (depth) and R (depth using optional relationships) #178
dvklopfenstein
committedSep 29, 2020

Commits on Jun 20, 2020

new notebook: download population genes from NCBI
dvklopfenstein
committedJun 20, 2020
New notebook: download a set of background genes fron NCBI
dvklopfenstein
committedJun 20, 2020

Commits on Mar 13, 2020

Add run_goea quiet mode example. Add examples of custome GOEA print summaries.
dvklopfenstein
committedMar 13, 2020

Commits on Feb 22, 2020

Use set rather than list for faster iteration
dvklopfenstein
committedFeb 22, 2020
Documented how to suppress GODag output messages.
dvklopfenstein
committedFeb 22, 2020

Commits on Feb 20, 2020

Commits on Feb 14, 2020

Add option to work with all taxids using NCBI annotations
dvklopfenstein
committedFeb 14, 2020

Commits on Nov 22, 2019

Add image visualizing GO parents
dvklopfenstein
committedNov 22, 2019
TOC without links
dvklopfenstein
committedNov 22, 2019
updsate links
dvklopfenstein
committedNov 22, 2019