Changed example to read local uncompressed gaf file.

tanghaibao · Feb 22, 2018 · d88f8c7 · d88f8c7
1 parent a83151a
commit d88f8c7
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/notebooks/semantic_similarity.ipynb b/notebooks/semantic_similarity.ipynb
@@ -104,14 +104,14 @@
  "name": "stdout",
  "output_type": "stream",
  "text": [
- " READ 211727 items: http:https://geneontology.org/gene-associations/gene_association.tair.gz\n"
+ " READ 211727 items: gene_association.tair\n"
  ]
  }
  ],
  "source": [
  "from goatools.associations import read_gaf\n",
  "\n",
- "associations = read_gaf(\"http:https://geneontology.org/gene-associations/gene_association.tair.gz\")"
+ "associations = read_gaf(\"gene_association.tair\")"
  ]
  },
  {