This repository contains an Extract-Transform-Load (ETL) process for mapping the MIMIC-III database to the FHIR. This process involves both transforming the structure of the database (i.e. the relational schema), but also standardizing the many concepts in the MIMIC-III database to a standard vocabulary.

• FHIR Resources
• MIMIC TABLES EQUIVALENCE

This section lists the FHIR resources which have been populated from MIMIC-III. You can use this section to figure out what data generated each FHIR Resources. For example, we can see that the FHIR Resource patient was populated using data from the patients table in MIMIC-III.

Currently supported FHIR Resources:

• Bundle
• Patient
• Encounter
• Condition
• Observation
• DiagnosticReport
• Procedure
• ImagingStudy
• Immunization
• CarePlan
• MedicationRequest
• Claim

This section lists all the tables in MIMIC-III, and shows where the data now exists in the FHIR Resources. For example, we can see that the MIMIC-III table patients was used to populate the FHIR Resources patient.

TBD

• patients
  • Patient
• admissions
• transfers
• icustays
• service
• prescriptions
• inputevents_cv
• inputevents_mv
• outputevents
• labevents
• microbiologyevents
• chartevents
• drgcodes
• datetimeevents
• procedure_icd
• procedureevents_mv
• cptevents
• diagnosis_icd
• notevents
• caregivers
• callout

• This repository is largely rely on mimic-omop project which is for ETL from MIMIC-III database to OMOP CDM.