add manifest, change dir names

sysilviakim · Aug 26, 2020 · 05bf1f8 · 05bf1f8
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diff --git a/Epilogue/customTests.R b/Epilogue/customTests.R
@@ -0,0 +1,12 @@
+# Put custom tests in this file.
+
+ # Uncommenting the following line of code will disable
+ # auto-detection of new variables and thus prevent swirl from
+ # executing every command twice, which can slow things down.
+
+ # AUTO_DETECT_NEWVAR <- FALSE
+
+ # However, this means that you should detect user-created
+ # variables when appropriate. The answer test, creates_new_var()
+ # can be used for for the purpose, but it also re-evaluates the
+ # expression which the user entered, so care must be taken.
diff --git a/01_overview/dependson.txt → Epilogue/dependson.txt b/01_overview/dependson.txt → Epilogue/dependson.txt
diff --git a/Epilogue/initLesson.R b/Epilogue/initLesson.R
@@ -0,0 +1,4 @@
+# Code placed in this file fill be executed every time the
+ # lesson is started. Any variables created here will show up in
+ # the user's working directory and thus be accessible to them
+ # throughout the lesson.
diff --git a/Epilogue/lesson.yaml b/Epilogue/lesson.yaml
@@ -0,0 +1,79 @@
+- Class: meta
+ Course: swirl
+ Lesson: Epilogue
+ Author: Seo-young Silvia Kim
+ Type: Standard
+ Organization: American University
+ Version: 0.1.0
+
+# INTRO ========================================================================
+- Class: text
+ Output: >
+ This is a wrap-up to the swirl-tidy lesson.
+ We covered a lot of ground in this series of twenty-something swirl lessons.
+ 
+# PREAMBLE =====================================================================
+## demo_lesson(4)
+- Class: text
+ Output: >
+ We covered, using tidyverse packages,
+ 
+ 
+ (1) how to import data
+ 
+ 
+ (2) how to tidy the data
+ 
+ 
+ (3) how to transform the data
+ 
+ 
+ (4) how to visualize the data
+ 
+ 
+ (5) how to better program 
+ 
+ 
+ (6) how to create statistical models
+ 
+## demo_lesson(5)
+- Class: text
+ Output: >
+ Some packages that are part of the tidyverse that are not covered here
+ include {DBI}, {httr}, {jsonlite}, {xml2} (although this is loaded when
+ we worked with {rvest}), {hms}, {blob}, and {glue}.
+ 
+## demo_lesson(6)
+- Class: text
+ Output: >
+ I also haven't covered {magrittr}, which is commonly used, but currently
+ this package is undergoing a major overhaul to magrittr 2.0, so I will wait
+ to see what I want to include in the lesson.
+ 
+## demo_lesson(7)
+- Class: text
+ Output: >
+ Again, as we saw with {rvest}, tidyverse alone may not be an answer to
+ everything. Look up StackOverflow if you have specific needs that are not
+ met.
+ 
+## demo_lesson(8)
+- Class: text
+ Output: >
+ * If you work with large datasets, I urge you to check out {data.table} by
+ Matt Dowle at https://github.com/Rdatatable/data.table.
+ 
+ 
+ * If you work a lot with machine learning, check out {caret} by Max Kuhn
+ at https://topepo.github.io/caret/. 
+ 
+ 
+ * {xtable} is a great package to export your data/model summaries into 
+ tables, especially LaTeX files. This will be extremely useful in making
+ your results reproducible.
+ 
+# OUTRO ========================================================================
+- Class: text
+ Output: >
+ Check back for more updates on swirl-tidy! Good luck on your R journey.
+ 
diff --git a/01_overview/customTests.R → Import_with_haven/customTests.R b/01_overview/customTests.R → Import_with_haven/customTests.R
diff --git a/02_intro_tibbles/dependson.txt → Import_with_haven/dependson.txt b/02_intro_tibbles/dependson.txt → Import_with_haven/dependson.txt
diff --git a/01_overview/initLesson.R → Import_with_haven/initLesson.R b/01_overview/initLesson.R → Import_with_haven/initLesson.R
diff --git a/05_import_haven/lesson.yaml → Import_with_haven/lesson.yaml b/05_import_haven/lesson.yaml → Import_with_haven/lesson.yaml
@@ -1,6 +1,6 @@
 - Class: meta
  Course: swirl-tidy
- Lesson: 05_import_haven
+ Lesson: Import_with_haven
  Author: Seo-young Silvia Kim
  Type: Standard
  Organization: American University
@@ -69,6 +69,6 @@
 # OUTRO ========================================================================
 - Class: text
  Output: >-
- You have completed "05_import_haven" lesson of swirl-tidy!
+ You have completed "Import with haven" lesson of swirl-tidy!
  I will see you in the next lesson.
  
diff --git a/02_intro_tibbles/customTests.R → Import_with_readr/customTests.R b/02_intro_tibbles/customTests.R → Import_with_readr/customTests.R
diff --git a/03_intro_pipes/dependson.txt → Import_with_readr/dependson.txt b/03_intro_pipes/dependson.txt → Import_with_readr/dependson.txt
diff --git a/04_import_readr/file.csv → Import_with_readr/file.csv b/04_import_readr/file.csv → Import_with_readr/file.csv
diff --git a/04_import_readr/file.fwf → Import_with_readr/file.fwf b/04_import_readr/file.fwf → Import_with_readr/file.fwf
diff --git a/04_import_readr/file.tsv → Import_with_readr/file.tsv b/04_import_readr/file.tsv → Import_with_readr/file.tsv
diff --git a/04_import_readr/file.txt → Import_with_readr/file.txt b/04_import_readr/file.txt → Import_with_readr/file.txt
diff --git a/04_import_readr/file2.csv → Import_with_readr/file2.csv b/04_import_readr/file2.csv → Import_with_readr/file2.csv
diff --git a/04_import_readr/file_mess.csv → Import_with_readr/file_mess.csv b/04_import_readr/file_mess.csv → Import_with_readr/file_mess.csv
diff --git a/04_import_readr/initLesson.R → Import_with_readr/initLesson.R b/04_import_readr/initLesson.R → Import_with_readr/initLesson.R
diff --git a/04_import_readr/lesson.yaml → Import_with_readr/lesson.yaml b/04_import_readr/lesson.yaml → Import_with_readr/lesson.yaml
@@ -1,6 +1,6 @@
 - Class: meta
  Course: swirl-tidy
- Lesson: 04_import_readr
+ Lesson: Import_with_readr
  Author: Seo-young Silvia Kim
  Type: Standard
  Organization: American University
@@ -49,7 +49,7 @@
 - Class: text
  Output: >-
  Note that {readr} does not import .xls or .xlsx files. For that, you have to
- use {readxl} package. Go to lesson "06_import_readxl" for more info on how
+ use {readxl} package. Go to lesson "Import_with_readxl" for more info on how
  to export Excel files.
 
 ## demo_lesson(6)
@@ -406,7 +406,7 @@
 # OUTRO ========================================================================
 - Class: text
  Output: >-
- You have completed "04_import_readr" lesson of swirl-tidy!
+ You have completed "Import with readr" lesson of swirl-tidy!
  Check out its official website at https://readr.tidyverse.org. 
  I will see you in the next lesson.
  
diff --git a/03_intro_pipes/customTests.R → Import_with_readxl/customTests.R b/03_intro_pipes/customTests.R → Import_with_readxl/customTests.R
diff --git a/04_import_readr/dependson.txt → Import_with_readxl/dependson.txt b/04_import_readr/dependson.txt → Import_with_readxl/dependson.txt
diff --git a/02_intro_tibbles/initLesson.R → Import_with_readxl/initLesson.R b/02_intro_tibbles/initLesson.R → Import_with_readxl/initLesson.R
diff --git a/06_import_readxl/lesson.yaml → Import_with_readxl/lesson.yaml b/06_import_readxl/lesson.yaml → Import_with_readxl/lesson.yaml
@@ -1,6 +1,6 @@
 - Class: meta
  Course: swirl-tidy
- Lesson: 06_import_readxl
+ Lesson: Import_with_readxl
  Author: Seo-young Silvia Kim
  Type: Standard
  Organization: American University
@@ -70,6 +70,6 @@
 # OUTRO ========================================================================
 - Class: text
  Output: >-
- You have completed "06_import_readxl" lesson of swirl-tidy!
+ You have completed "Import with readxl" lesson of swirl-tidy!
  I will see you in the next lesson.
  
diff --git a/04_import_readr/customTests.R → Import_with_rvest/customTests.R b/04_import_readr/customTests.R → Import_with_rvest/customTests.R
diff --git a/05_import_haven/dependson.txt → Import_with_rvest/dependson.txt b/05_import_haven/dependson.txt → Import_with_rvest/dependson.txt
diff --git a/05_import_haven/initLesson.R → Import_with_rvest/initLesson.R b/05_import_haven/initLesson.R → Import_with_rvest/initLesson.R
diff --git a/07_import_rvest/lesson.yaml → Import_with_rvest/lesson.yaml b/07_import_rvest/lesson.yaml → Import_with_rvest/lesson.yaml
@@ -1,6 +1,6 @@
 - Class: meta
  Course: swirl-tidy
- Lesson: 07_import_rvest
+ Lesson: Import_with_rvest
  Author: Seo-young Silvia Kim
  Type: Standard
  Organization: American University
@@ -71,6 +71,6 @@
 # OUTRO ========================================================================
 - Class: text
  Output: >-
- You have completed "07_import_rvest" lesson of swirl-tidy!
+ You have completed "Import with rvest" lesson of swirl-tidy!
  I will see you in the next lesson.
  
diff --git a/05_import_haven/customTests.R → Introduction_to_pipes/customTests.R b/05_import_haven/customTests.R → Introduction_to_pipes/customTests.R
diff --git a/06_import_readxl/dependson.txt → Introduction_to_pipes/dependson.txt b/06_import_readxl/dependson.txt → Introduction_to_pipes/dependson.txt
diff --git a/03_intro_pipes/initLesson.R → Introduction_to_pipes/initLesson.R b/03_intro_pipes/initLesson.R → Introduction_to_pipes/initLesson.R
diff --git a/03_intro_pipes/lesson.yaml → Introduction_to_pipes/lesson.yaml b/03_intro_pipes/lesson.yaml → Introduction_to_pipes/lesson.yaml
@@ -1,6 +1,6 @@
 - Class: meta
  Course: swirl-tidy
- Lesson: 03_intro_pipes
+ Lesson: Introduction_to_pipes
  Author: Seo-young Silvia Kim
  Type: Standard
  Organization: American University
@@ -220,6 +220,6 @@
 
 - Class: text
  Output: >-
- You have completed "03_intro_pipes" lesson of swirl-tidy!
+ You have completed "Introduction to pipes" lesson of swirl-tidy!
  I will see you in the next lesson.
  
diff --git a/06_import_readxl/customTests.R → Introduction_to_tibbles/customTests.R b/06_import_readxl/customTests.R → Introduction_to_tibbles/customTests.R
diff --git a/07_import_rvest/dependson.txt → Introduction_to_tibbles/dependson.txt b/07_import_rvest/dependson.txt → Introduction_to_tibbles/dependson.txt
diff --git a/06_import_readxl/initLesson.R → Introduction_to_tibbles/initLesson.R b/06_import_readxl/initLesson.R → Introduction_to_tibbles/initLesson.R
diff --git a/02_intro_tibbles/lesson.yaml → Introduction_to_tibbles/lesson.yaml b/02_intro_tibbles/lesson.yaml → Introduction_to_tibbles/lesson.yaml
@@ -1,6 +1,6 @@
 - Class: meta
  Course: swirl-tidy
- Lesson: 02_intro_tibbles
+ Lesson: Introduction_to_tibbles
  Author: Seo-young Silvia Kim
  Type: Standard
  Organization: American University
@@ -365,7 +365,7 @@
 
 - Class: text
  Output: >-
- You have completed "02_intro_tibbles" lesson of swirl-tidy!
+ You have completed "Introduction to tibbles" lesson of swirl-tidy!
  I will see you in the next lesson.
 
  
diff --git a/MANIFEST b/MANIFEST
@@ -0,0 +1,21 @@
+Overview
+Introduction_to_tibbles
+Introduction_to_pipes
+Import_with_readr
+Import_with_haven
+Import_with_readxl
+Import_with_rvest
+Tidy_with_tibble
+Tidy_with_tidyr
+Transform_with_dplyr_I
+Transform_with_dplyr_II
+Transform_with_dplyr_III
+Transform_with_dplyr_IV
+Transform_with_forcats
+Transform_with_stringr
+Transform_with_lubridate
+Program_with_purrr
+Visualize_with_ggplot2_I
+Visualize_with_ggplot2_II
+Visualize_with_ggplot2_III
+Epilogue
diff --git a/Model_with_tidymodels/customTests.R b/Model_with_tidymodels/customTests.R
@@ -0,0 +1,12 @@
+# Put custom tests in this file.
+
+ # Uncommenting the following line of code will disable
+ # auto-detection of new variables and thus prevent swirl from
+ # executing every command twice, which can slow things down.
+
+ # AUTO_DETECT_NEWVAR <- FALSE
+
+ # However, this means that you should detect user-created
+ # variables when appropriate. The answer test, creates_new_var()
+ # can be used for for the purpose, but it also re-evaluates the
+ # expression which the user entered, so care must be taken.
diff --git a/08_tidy_tibble/dependson.txt → Model_with_tidymodels/dependson.txt b/08_tidy_tibble/dependson.txt → Model_with_tidymodels/dependson.txt
diff --git a/Model_with_tidymodels/initLesson.R b/Model_with_tidymodels/initLesson.R
@@ -0,0 +1,4 @@
+# Code placed in this file fill be executed every time the
+ # lesson is started. Any variables created here will show up in
+ # the user's working directory and thus be accessible to them
+ # throughout the lesson.
diff --git a/Model_with_tidymodels/lesson.yaml b/Model_with_tidymodels/lesson.yaml
@@ -0,0 +1,79 @@
+- Class: meta
+ Course: swirl
+ Lesson: Model_with_tidymodels
+ Author: Seo-young Silvia Kim
+ Type: Standard
+ Organization: American University
+ Version: 0.1.0
+
+# INTRO ========================================================================
+- Class: text
+ Output: >
+ (THIS LESSON IS A PLACEHOLDER FOR FUTURE DEVELOPMENT. CHECK BACK LATER!)
+ 
+ 
+ Welcome back! Today we will continue to explore how to do statistical models
+ using {tidymodels} package. When you see ..., press Enter.
+ 
+- Class: cmd_question
+ Output: >-
+ Run {install.packages("tidymodels")}, if it is not already installed.
+ This is tidymodels not tidyverse!!
+ 
+ 
+ You can type "skip()" if this package is already installed.
+ Remember to close all other sessions of R (if Windows) before this step.
+ Otherwise, you may run into error messages such as 'Warning in
+ install.packages : installation of package ‘XXX’ had non-zero exit status'.
+ CorrectAnswer: if (!require("tidymodels")) install.packages("tidymodels")
+ AnswerTests: >-
+ any_of_exprs(
+ 'install.packages(pkgs = "tidymodels")',
+ 'if (!require("tidymodels")) install.packages(pkgs = "tidymodels")',
+ 'skip()'
+ )
+ Hint: 'If the package is already installed, type skip().'
+
+- Class: cmd_question
+ Output: 'Now load the tidymodels package.'
+ CorrectAnswer: library("tidymodels")
+ AnswerTests: any_of_exprs('library(tidymodels)', 'library("tidymodels")')
+ Hint: 'Avoid using {require}. Use {library}.'
+
+# PREAMBLE =====================================================================
+## demo_lesson(4)
+- Class: text
+ Output: >-
+ Just like the tidyverse, tidymodels is a *collection* of packages, such as
+ {parsnip}, {recipes}, and so on.
+ 
+## demo_lesson(5)
+## demo_lesson(6)
+## demo_lesson(7)
+## demo_lesson(8)
+## demo_lesson(9)
+## demo_lesson(10)
+## demo_lesson(11)
+## demo_lesson(12)
+## demo_lesson(13)
+## demo_lesson(14)
+## demo_lesson(15)
+## demo_lesson(16)
+## demo_lesson(17)
+## demo_lesson(18)
+## demo_lesson(19)
+## demo_lesson(20)
+## demo_lesson(21)
+## demo_lesson(22)
+## demo_lesson(23)
+## demo_lesson(24)
+## demo_lesson(25)
+
+# OUTRO ========================================================================
+- Class: text
+ Output: >-
+ You have completed "Model with tidymodels" lesson of swirl-tidy!
+ This is the last lesson as of version 0.1.0.
+ Congratulations on making this far. You've done really well!
+ Drop in to see what could be future development in "Epilogue".
+ 
diff --git a/07_import_rvest/customTests.R → Overview/customTests.R b/07_import_rvest/customTests.R → Overview/customTests.R
diff --git a/09_tidy_tidyr/dependson.txt → Overview/dependson.txt b/09_tidy_tidyr/dependson.txt → Overview/dependson.txt
diff --git a/07_import_rvest/initLesson.R → Overview/initLesson.R b/07_import_rvest/initLesson.R → Overview/initLesson.R
diff --git a/01_overview/lesson.yaml → Overview/lesson.yaml b/01_overview/lesson.yaml → Overview/lesson.yaml
@@ -1,6 +1,6 @@
 - Class: meta
  Course: swirl-tidy
- Lesson: 01_overview
+ Lesson: Overview
  Author: Seo-young Silvia Kim
  Type: Standard
  Organization: American University
@@ -120,5 +120,5 @@
 # OUTRO ========================================================================
 - Class: text
  Output: >-
- You have completed "01_overview" lesson of swirl-tidy!
+ You have completed "Overview" lesson of swirl-tidy!
  I will see you in the next lesson.
diff --git a/08_tidy_tibble/customTests.R → Program_with_purrr/customTests.R b/08_tidy_tibble/customTests.R → Program_with_purrr/customTests.R
diff --git a/10_transform_dplyr_1/dependson.txt → Program_with_purrr/dependson.txt b/10_transform_dplyr_1/dependson.txt → Program_with_purrr/dependson.txt
diff --git a/08_tidy_tibble/initLesson.R → Program_with_purrr/initLesson.R b/08_tidy_tibble/initLesson.R → Program_with_purrr/initLesson.R
diff --git a/20_program_purrr/lesson.yaml → Program_with_purrr/lesson.yaml b/20_program_purrr/lesson.yaml → Program_with_purrr/lesson.yaml
@@ -1,6 +1,6 @@
 - Class: meta
  Course: swirl-tidy
- Lesson: 20_program_purrr
+ Lesson: Program_with_purrr
  Author: Seo-young Silvia Kim
  Type: Standard
  Organization: American University
@@ -71,7 +71,6 @@
 # OUTRO ========================================================================
 - Class: text
  Output: >-
- You have completed "20_program_purrr" lesson of swirl-tidy!
- This is the last lesson as of version 0.1.0.
- Congratulations on making this far. You've done really well!
+ You have completed "Program with purrr" lesson of swirl-tidy!
+ I will see you in the next lesson.
  
diff --git a/09_tidy_tidyr/customTests.R → Tidy_with_tibble/customTests.R b/09_tidy_tidyr/customTests.R → Tidy_with_tibble/customTests.R
diff --git a/11_transform_dplyr_2/dependson.txt → Tidy_with_tibble/dependson.txt b/11_transform_dplyr_2/dependson.txt → Tidy_with_tibble/dependson.txt
diff --git a/09_tidy_tidyr/initLesson.R → Tidy_with_tibble/initLesson.R b/09_tidy_tidyr/initLesson.R → Tidy_with_tibble/initLesson.R
diff --git a/08_tidy_tibble/lesson.yaml → Tidy_with_tibble/lesson.yaml b/08_tidy_tibble/lesson.yaml → Tidy_with_tibble/lesson.yaml
@@ -1,6 +1,6 @@
 - Class: meta
  Course: swirl-tidy
- Lesson: 08_tidy_tibble
+ Lesson: Tidy_with_tibble
  Author: Seo-young Silvia Kim
  Type: Standard
  Organization: American University
@@ -41,7 +41,7 @@
 ## demo_lesson(4)
 - Class: text
  Output: >-
- We already explored tibble basics in lesson "02_intro_tibbles". 
+ We already explored tibble basics in lesson "Introduction_to_tibbles". 
  As promised, here you will learn how to convert other types of
  data structures (list, matrix, vector, ...) into tibbles, create transposed
  tibbles, add rows/columns, and tidy the data frame's column names.
@@ -71,6 +71,6 @@
 # OUTRO ========================================================================
 - Class: text
  Output: >-
- You have completed "08_tidy_tibble" lesson of swirl-tidy!
+ You have completed "Tidy with tibble" lesson of swirl-tidy!
  I will see you in the next lesson.
  
diff --git a/10_transform_dplyr_1/customTests.R → Tidy_with_tidyr/customTests.R b/10_transform_dplyr_1/customTests.R → Tidy_with_tidyr/customTests.R
diff --git a/12_transform_dplyr_3/dependson.txt → Tidy_with_tidyr/dependson.txt b/12_transform_dplyr_3/dependson.txt → Tidy_with_tidyr/dependson.txt
diff --git a/10_transform_dplyr_1/initLesson.R → Tidy_with_tidyr/initLesson.R b/10_transform_dplyr_1/initLesson.R → Tidy_with_tidyr/initLesson.R