Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data

Collaborative Informatics and Neuroimaging Suite Toolkit for Anonymous Computation

A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set

This is a web portal to facilitate privacy preserving and secure genomics analysis with multiple parties.

Enhanced version of the FastQTL QTL mapper

Ultrafast GPU-enabled QTL mapper

Collection of analysis tools for quantitative trait loci

The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource

1000 Genomes Project Metadata R Package

Software for estimating correlation of trait effect sizes across populations

Management of References for Yourself

SNV calling from single cell sequencing

Interactively analyze single cell genomic data

Self-supervised representation learning combining GTEx histology, RNA-seq and WGS

Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)

Python API for comprehensive GWAS analysis using GEMMA

Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.

A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/

Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.

Modeling and Analysis of (Statistical) Genetics data in python

Packaging common Seurat analysis tasks for reproducible research

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.

fast bgen parser for python

Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)

An easy-to-use, flexible website template for labs.