Foldseek enables fast and sensitive comparisons of large structure sets.

Code for running RFdiffusion

Making Protein folding accessible to all!

Typed argument parser for Python

TextGrad: Automatic ''Differentiation'' via Text -- using large language models to backpropagate textual gradients.

The official Python library for the OpenAI API

Thompson Sampling

Geometric deep learning method to predict protein binding interfaces from a protein structure.

Google Drive Public File Downloader when Curl/Wget Fails

Monte Carlo tree search in JAX

A comprehensive library for computational molecular biology

An in-browser Python profile viewer

Open source code for AlphaFold 2.

Convenience Python APIs for antibody numbering using ANARCI

Knee point detection in Python 📈

active learning for accelerated high-throughput virtual screening

A survival guide for CS PhD students at Stanford

Large language modeling applied to T-cell receptor (TCR) sequences.

Remote protein homology detection suite.

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

Official git repository for Biopython (originally converted from CVS)

POT : Python Optimal Transport

A Python toolkit for pathology image analysis algorithms.

Multiscale modeling of E.coli chemotaxis

Hierarchical Generation of Molecular Graphs using Structural Motifs

Multi-Objective Molecule Generation using Interpretable Substructures (ICML 2020)

Official Python client for accessing ChEMBL API

Command line app for predicting bacterial accumulation