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EXONIC_FRACTION default value #152

Merged
merged 1 commit into from
Apr 8, 2022
Merged

EXONIC_FRACTION default value #152

merged 1 commit into from
Apr 8, 2022

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micknudsen
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In Arriba v2.2.1 the default value of EXONIC_FRACTION is 0.33.

$ arriba -help | grep -A5 EXONIC
 -e EXONIC_FRACTION  The breakpoints of false-positive predictions of intragenic events 
                     are often both in exons. True predictions are more likely to have at 
                     least one breakpoint in an intron, because introns are larger. If the 
                     fraction of exonic sequence between two breakpoints is smaller than 
                     the given fraction, the 'intragenic_exonic' filter discards the 
                     event. Default: 0.330000

@suhrig suhrig changed the base branch from master to develop April 8, 2022 13:49
@suhrig suhrig merged commit 8d57a71 into suhrig:develop Apr 8, 2022
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suhrig commented Apr 8, 2022

Thanks for reporting & fixing!

@micknudsen micknudsen deleted the patch-1 branch April 8, 2022 15:31
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