v1.4.0

[jhollway]

Description

2024-05-23

Package

• Updated migraph logo with stocnet address, colorsafe colorway, and larger nodes and ties
• Copied thisRequires() helper into migraph from manynet

Measures

• All measure functions can now be used in e.g. mutate() without specifying .data

Members

• All membership functions can now be used in e.g. mutate() without specifying .data
• The node_member class is now categorical
  • make_node_member() now converts numeric results to LETTER character results
  • print.node_member() now works with categorical membership vectors
  • print.node_member() now declares how many groups before reporting the vectors
• Fixed node_constraint() to work with weighted two-mode networks, thanks to Toshitaka Izumi for spotting this
• Added network_independence() for calculating the number of nodes in the largest independent set

Motifs

• node_tie_census() now works on longitudinal network data
• Added to_correlation() for calculating the Pearson correlation
  • This takes a method argument for "all", "diag", "recip", or "complex"
  • These are similar to functions implemented by Ron Breiger and shared by him in correspondence
• Fixed bug where print.node_motif() wasn't printing the requested number of lines

Models

• Several improvements to cluster_concor()
  • cluster_concor() now uses to_correlation() for initial correlation
  • It still uses stats::cor() for subsequent iterations
  • Fixed how cluster_concor() handles unlabelled networks
  • Fixed how cluster_concor() handles two-mode networks
  • Fixed bug where cluster_concor() cutoff resulted in unsplit groups
• cluster_hierarchical() now also uses to_correlation()

Checklist:

• Documentation
  • Any longer functions are commented inline so that it is easier to debug in the future
  • Any new or modified functions or data have roxygen style documentation in their .R scripts
  • DESCRIPTION file version is bumped by the appropriate increment (major, minor, patch)
• PR form
  • Title indicates expected version number
  • PR description above and the NEWS.md file are aligned
  • Any closed, fixed, or related issues are referenced and described, e.g. "Fixed #0 by adding A"
• PR checks all pass for latest commit
  • Package builds on my OS without issues
  • CodeFactor check: Package improves or maintains good style
  • Package builds on Mac
  • Package builds on Windows
  • Package builds on Linux
  • CodeCov check: Package improves or maintains good test coverage

[codecov]

Codecov Report

Attention: Patch coverage is 44.40000% with 139 lines in your changes missing coverage. Please review.

Project coverage is 49.46%. Comparing base (ce11fef) to head (4d15f50).
Report is 17 commits behind head on main.

❗ Current head 4d15f50 differs from pull request most recent head 8137de6

Please upload reports for the commit 8137de6 to get more accurate results.

Files	Patch %	Lines
R/motif_census.R	48.93%	24 Missing ⚠️
R/member_community.R	52.77%	17 Missing ⚠️
R/model_cluster.R	54.83%	14 Missing ⚠️
R/measure_centrality.R	0.00%	11 Missing ⚠️
R/measure_cohesion.R	0.00%	11 Missing ⚠️
R/measure_features.R	10.00%	9 Missing ⚠️
R/measure_holes.R	10.00%	9 Missing ⚠️
R/measure_heterogeneity.R	0.00%	8 Missing ⚠️
R/measure_closure.R	0.00%	6 Missing ⚠️
R/class_members.R	33.33%	4 Missing ⚠️
... and 11 more

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #295      +/-   ##
==========================================
- Coverage   50.76%   49.46%   -1.31%     
==========================================
  Files          25       27       +2     
  Lines        2147     2347     +200     
==========================================
+ Hits         1090     1161      +71     
- Misses       1057     1186     +129     

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[henriquesposito]

Thank you for all the work @jhollway , the new logo looks great!